GP-5078: Improvements to Ghidra Module directory layout

GhidraBuild/EclipsePlugins/GhidraDev/GhidraDevFeature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="ghidra.ghidradev"
       label="GhidraDev"
-      version="4.0.0.qualifier"
+      version="4.0.1.qualifier"
       provider-name="Ghidra">
 
    <description>

GhidraBuild/EclipsePlugins/GhidraDev/GhidraDevPlugin/.launch/GhidraDev.launch

@@ -168,13 +168,14 @@
         <setEntry value="com.google.guava@default:default"/>
         <setEntry value="com.ibm.icu@default:default"/>
         <setEntry value="com.python.pydev.analysis*6.3.1.201802272029@default:default"/>
+        <setEntry value="com.sun.el.javax.el@default:default"/>
         <setEntry value="com.sun.jna.platform@default:default"/>
         <setEntry value="com.sun.jna@default:default"/>
-        <setEntry value="jakarta.annotation-api@default:default"/>
+        <setEntry value="jakarta.annotation-api*1.3.5@default:default"/>
+        <setEntry value="jakarta.annotation-api*2.1.1@default:default"/>
         <setEntry value="jakarta.inject.jakarta.inject-api*1.0.5@default:default"/>
         <setEntry value="jakarta.inject.jakarta.inject-api*2.0.1@default:default"/>
         <setEntry value="jakarta.servlet-api@default:default"/>
-        <setEntry value="javax.annotation@default:default"/>
         <setEntry value="javax.xml@default:default"/>
         <setEntry value="jaxen@default:default"/>
         <setEntry value="org.apache.aries.spifly.dynamic.bundle@default:default"/>
@@ -183,6 +184,8 @@
         <setEntry value="org.apache.batik.i18n@default:default"/>
         <setEntry value="org.apache.batik.util@default:default"/>
         <setEntry value="org.apache.commons.cli@default:default"/>
+        <setEntry value="org.apache.commons.collections@default:default"/>
+        <setEntry value="org.apache.commons.commons-beanutils@default:default"/>
         <setEntry value="org.apache.commons.commons-codec@default:default"/>
         <setEntry value="org.apache.commons.commons-io@default:default"/>
         <setEntry value="org.apache.commons.jxpath@default:default"/>
@@ -381,10 +384,13 @@
         <setEntry value="org.eclipse.wst.xsd.core@default:default"/>
         <setEntry value="org.eclipse.xsd@default:default"/>
         <setEntry value="org.gradle.toolingapi@default:default"/>
-        <setEntry value="org.hamcrest.core*2.2.0.v20230809-1000@default:default"/>
+        <setEntry value="org.hamcrest.core@default:default"/>
         <setEntry value="org.hamcrest@default:default"/>
         <setEntry value="org.jdom2@default:default"/>
+        <setEntry value="org.jdom@default:default"/>
         <setEntry value="org.junit@default:default"/>
+        <setEntry value="org.mortbay.jasper.apache-el@default:default"/>
+        <setEntry value="org.mortbay.jasper.apache-jsp@default:default"/>
         <setEntry value="org.objectweb.asm.commons@default:default"/>
         <setEntry value="org.objectweb.asm.tree.analysis@default:default"/>
         <setEntry value="org.objectweb.asm.tree@default:default"/>

GhidraBuild/EclipsePlugins/GhidraDev/GhidraDevPlugin/META-INF/MANIFEST.MF

@@ -3,7 +3,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: GhidraDev
 Bundle-SymbolicName: ghidra.ghidradev;singleton:=true
-Bundle-Version: 4.0.0.qualifier
+Bundle-Version: 4.0.1.qualifier
 Bundle-Activator: ghidradev.Activator
 Require-Bundle: org.eclipse.ant.core;bundle-version="3.7.200",
  org.eclipse.buildship.core;bundle-version="3.1.8",

GhidraBuild/EclipsePlugins/GhidraDev/GhidraDevPlugin/README.md

@@ -30,6 +30,9 @@ change with future releases.
  12. [Building](#building)
 
 ## Change History
+__4.0.1:__
+* New Ghidra module projects now contain a default `README.md` file.
+
 __4.0.0:__
 * GhidraDev has been upgraded to be compatible with Ghidra 11.2 and later. It is not backwards
   compatible with versions of Ghidra prior to 11.2. Older versions of GhidraDev will report an 

GhidraBuild/EclipsePlugins/GhidraDev/GhidraDevPlugin/src/main/java/ghidradev/ghidraprojectcreator/utils/GhidraModuleUtils.java

@@ -193,6 +193,11 @@ public class GhidraModuleUtils {
 		// Update language ant properties file
 		GhidraModuleUtils.writeAntProperties(project, ghidraLayout);
 
+		// Create a README
+		try (PrintWriter out = new PrintWriter(new File(projectDir, "README.md"))) {
+			out.println("# " + project.getName());
+		}
+
 		// Refactor/rename the source files, package, and help files
 		String packageName = project.getName().toLowerCase();
 		for (ModuleTemplateType moduleTemplateType : moduleTemplateTypes) {

GhidraBuild/Skeleton/README.md

@@ -0,0 +1 @@
+# Skeleton

GhidraBuild/Skeleton/certification.manifest

@@ -1,5 +1,6 @@
 ##VERSION: 2.0
 Module.manifest||GHIDRA||reviewed||END|
+README.md||GHIDRA||||END|
 data/README.txt||GHIDRA||||END|
 data/buildLanguage.xml||GHIDRA||||END|
 data/languages/skel.cspec||GHIDRA||||END|